Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar.
Identifieur interne : 002D44 ( Main/Exploration ); précédent : 002D43; suivant : 002D45Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar.
Auteurs : Aloïs Bresson [France] ; Véronique Jorge ; Arnaud Dowkiw ; Vanina Guerin ; Isabelle Bourgait ; Gerald A. Tuskan ; Jeremy Schmutz ; Boulos Chalhoub ; Catherine Bastien ; Patricia Faivre RampantSource :
- The New phytologist [ 1469-8137 ] ; 2011.
Descripteurs français
- KwdFr :
- Basidiomycota (physiologie), Cartographie physique de chromosome (MeSH), Chromosomes de plante (génétique), Croisements génétiques (MeSH), Gènes de plante (génétique), Génome végétal (génétique), Haplotypes (génétique), Liaison génétique (MeSH), Locus génétiques (génétique), Maladies des plantes (génétique), Maladies des plantes (immunologie), Maladies des plantes (microbiologie), Marqueurs génétiques (MeSH), Nucléotides (métabolisme), Phénotype (MeSH), Populus (génétique), Protéines (génétique), Résistance à la maladie (génétique), Sites de fixation (MeSH), Séquence nucléotidique (MeSH).
- MESH :
- génétique : Chromosomes de plante, Gènes de plante, Génome végétal, Haplotypes, Locus génétiques, Maladies des plantes, Populus, Protéines, Résistance à la maladie.
- immunologie : Maladies des plantes.
- microbiologie : Maladies des plantes.
- métabolisme : Nucléotides.
- physiologie : Basidiomycota.
- Cartographie physique de chromosome, Croisements génétiques, Liaison génétique, Marqueurs génétiques, Phénotype, Sites de fixation, Séquence nucléotidique.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Basidiomycota (physiology), Binding Sites (MeSH), Chromosomes, Plant (genetics), Crosses, Genetic (MeSH), Disease Resistance (genetics), Genes, Plant (genetics), Genetic Linkage (MeSH), Genetic Loci (genetics), Genetic Markers (MeSH), Genome, Plant (genetics), Haplotypes (genetics), Nucleotides (metabolism), Phenotype (MeSH), Physical Chromosome Mapping (MeSH), Plant Diseases (genetics), Plant Diseases (immunology), Plant Diseases (microbiology), Populus (genetics), Proteins (genetics).
- MESH :
- chemical , genetics : Proteins.
- chemical , metabolism : Nucleotides.
- chemical : Genetic Markers.
- genetics : Chromosomes, Plant, Disease Resistance, Genes, Plant, Genetic Loci, Genome, Plant, Haplotypes, Plant Diseases, Populus.
- immunology : Plant Diseases.
- microbiology : Plant Diseases.
- physiology : Basidiomycota.
- Base Sequence, Binding Sites, Crosses, Genetic, Genetic Linkage, Phenotype, Physical Chromosome Mapping.
Abstract
• R(US) is a major dominant gene controlling quantitative resistance, inherited from Populus trichocarpa, whereas R(1) is a gene governing qualitative resistance, inherited from P. deltoides. • Here, we report a reiterative process of concomitant fine-scale genetic and physical mapping guided by the P. trichocarpa genome sequence. The high-resolution linkage maps were developed using a P. deltoides × P. trichocarpa progeny of 1415 individuals. R(US) and R(1) were mapped in a peritelomeric region of chromosome 19. Markers closely linked to R(US) were used to screen a bacterial artificial chromosome (BAC) library constructed from the P. trichocarpa parent, heterozygous at the locus R(US) . • Two local physical maps were developed, one encompassing the R(US) allele and the other spanning r(US) . The alignment of the two haplophysical maps showed structural differences between haplotypes. The genetic and physical maps were anchored to the genome sequence, revealing genome sequence misassembly. Finally, the R(US) locus was localized within a 0.8-cM interval, whereas R(1) was localized upstream of R(US) within a 1.1-cM interval. • The alignment of the genetic and physical maps with the local reorder of the chromosome 19 sequence indicated that R(US) and R(1) belonged to a genomic region rich in nucleotide-binding site leucine-rich repeat (NBS-LRR) and serine threonine kinase (STK) genes.
DOI: 10.1111/j.1469-8137.2011.03786.x
PubMed: 21658182
Affiliations:
Links toward previous steps (curation, corpus...)
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(physiology)</term><term>Binding Sites (MeSH)</term><term>Chromosomes, Plant (genetics)</term><term>Crosses, Genetic (MeSH)</term><term>Disease Resistance (genetics)</term><term>Genes, Plant (genetics)</term><term>Genetic Linkage (MeSH)</term><term>Genetic Loci (genetics)</term><term>Genetic Markers (MeSH)</term><term>Genome, Plant (genetics)</term><term>Haplotypes (genetics)</term><term>Nucleotides (metabolism)</term><term>Phenotype (MeSH)</term><term>Physical Chromosome Mapping (MeSH)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (immunology)</term><term>Plant Diseases (microbiology)</term><term>Populus (genetics)</term><term>Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Basidiomycota (physiologie)</term><term>Cartographie physique de chromosome (MeSH)</term><term>Chromosomes de plante (génétique)</term><term>Croisements génétiques (MeSH)</term><term>Gènes de plante (génétique)</term><term>Génome végétal (génétique)</term><term>Haplotypes (génétique)</term><term>Liaison génétique (MeSH)</term><term>Locus génétiques (génétique)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (immunologie)</term><term>Maladies des plantes (microbiologie)</term><term>Marqueurs génétiques (MeSH)</term><term>Nucléotides (métabolisme)</term><term>Phénotype (MeSH)</term><term>Populus (génétique)</term><term>Protéines (génétique)</term><term>Résistance à la maladie (génétique)</term><term>Sites de fixation (MeSH)</term><term>Séquence nucléotidique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Nucleotides</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Plant</term><term>Disease Resistance</term><term>Genes, Plant</term><term>Genetic Loci</term><term>Genome, Plant</term><term>Haplotypes</term><term>Plant Diseases</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes de plante</term><term>Gènes de plante</term><term>Génome végétal</term><term>Haplotypes</term><term>Locus génétiques</term><term>Maladies des plantes</term><term>Populus</term><term>Protéines</term><term>Résistance à la maladie</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Nucléotides</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Binding Sites</term><term>Crosses, Genetic</term><term>Genetic Linkage</term><term>Phenotype</term><term>Physical Chromosome Mapping</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie physique de chromosome</term><term>Croisements génétiques</term><term>Liaison génétique</term><term>Marqueurs génétiques</term><term>Phénotype</term><term>Sites de fixation</term><term>Séquence nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">• R(US) is a major dominant gene controlling quantitative resistance, inherited from Populus trichocarpa, whereas R(1) is a gene governing qualitative resistance, inherited from P. deltoides. • Here, we report a reiterative process of concomitant fine-scale genetic and physical mapping guided by the P. trichocarpa genome sequence. The high-resolution linkage maps were developed using a P. deltoides × P. trichocarpa progeny of 1415 individuals. R(US) and R(1) were mapped in a peritelomeric region of chromosome 19. Markers closely linked to R(US) were used to screen a bacterial artificial chromosome (BAC) library constructed from the P. trichocarpa parent, heterozygous at the locus R(US) . • Two local physical maps were developed, one encompassing the R(US) allele and the other spanning r(US) . The alignment of the two haplophysical maps showed structural differences between haplotypes. The genetic and physical maps were anchored to the genome sequence, revealing genome sequence misassembly. Finally, the R(US) locus was localized within a 0.8-cM interval, whereas R(1) was localized upstream of R(US) within a 1.1-cM interval. • The alignment of the genetic and physical maps with the local reorder of the chromosome 19 sequence indicated that R(US) and R(1) belonged to a genomic region rich in nucleotide-binding site leucine-rich repeat (NBS-LRR) and serine threonine kinase (STK) genes.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21658182</PMID><DateCompleted><Year>2011</Year><Month>12</Month><Day>30</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>192</Volume><Issue>1</Issue><PubDate><Year>2011</Year><Month>Oct</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar.</ArticleTitle><Pagination><MedlinePgn>151-63</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/j.1469-8137.2011.03786.x</ELocationID><Abstract><AbstractText>• R(US) is a major dominant gene controlling quantitative resistance, inherited from Populus trichocarpa, whereas R(1) is a gene governing qualitative resistance, inherited from P. deltoides. • Here, we report a reiterative process of concomitant fine-scale genetic and physical mapping guided by the P. trichocarpa genome sequence. The high-resolution linkage maps were developed using a P. deltoides × P. trichocarpa progeny of 1415 individuals. R(US) and R(1) were mapped in a peritelomeric region of chromosome 19. Markers closely linked to R(US) were used to screen a bacterial artificial chromosome (BAC) library constructed from the P. trichocarpa parent, heterozygous at the locus R(US) . • Two local physical maps were developed, one encompassing the R(US) allele and the other spanning r(US) . The alignment of the two haplophysical maps showed structural differences between haplotypes. The genetic and physical maps were anchored to the genome sequence, revealing genome sequence misassembly. Finally, the R(US) locus was localized within a 0.8-cM interval, whereas R(1) was localized upstream of R(US) within a 1.1-cM interval. • The alignment of the genetic and physical maps with the local reorder of the chromosome 19 sequence indicated that R(US) and R(1) belonged to a genomic region rich in nucleotide-binding site leucine-rich repeat (NBS-LRR) and serine threonine kinase (STK) genes.</AbstractText><CopyrightInformation>© 2011 INRA. New Phytologist © 2011 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bresson</LastName><ForeName>Aloïs</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>INRA, UMR1165, UMR INRA/Université de Evry: Unité de Recherche en Génomique Végétale, Centre de Recherche de Versailles-Grignon, Evry Cedex, 91057, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jorge</LastName><ForeName>Véronique</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Dowkiw</LastName><ForeName>Arnaud</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Guerin</LastName><ForeName>Vanina</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Bourgait</LastName><ForeName>Isabelle</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>Tuskan</LastName><ForeName>Gerald A</ForeName><Initials>GA</Initials></Author><Author ValidYN="Y"><LastName>Schmutz</LastName><ForeName>Jeremy</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Chalhoub</LastName><ForeName>Boulos</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Bastien</LastName><ForeName>Catherine</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Faivre Rampant</LastName><ForeName>Patricia</ForeName><Initials>P</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>06</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D009711">Nucleotides</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D011506">Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C107657">leucine-rich repeat proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001665" MajorTopicYN="N">Binding Sites</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003433" MajorTopicYN="N">Crosses, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008040" MajorTopicYN="N">Genetic Linkage</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D056426" MajorTopicYN="N">Genetic Loci</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006239" MajorTopicYN="N">Haplotypes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009711" MajorTopicYN="N">Nucleotides</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020161" MajorTopicYN="Y">Physical Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011506" MajorTopicYN="N">Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2011</Year><Month>6</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>6</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>12</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">21658182</ArticleId><ArticleId IdType="doi">10.1111/j.1469-8137.2011.03786.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>France</li></country><region><li>Île-de-France</li></region></list><tree><noCountry><name sortKey="Bastien, Catherine" sort="Bastien, Catherine" uniqKey="Bastien C" first="Catherine" last="Bastien">Catherine Bastien</name><name sortKey="Bourgait, Isabelle" sort="Bourgait, Isabelle" uniqKey="Bourgait I" first="Isabelle" last="Bourgait">Isabelle Bourgait</name><name sortKey="Chalhoub, Boulos" sort="Chalhoub, Boulos" uniqKey="Chalhoub B" first="Boulos" last="Chalhoub">Boulos Chalhoub</name><name sortKey="Dowkiw, Arnaud" sort="Dowkiw, Arnaud" uniqKey="Dowkiw A" first="Arnaud" last="Dowkiw">Arnaud Dowkiw</name><name sortKey="Faivre Rampant, Patricia" sort="Faivre Rampant, Patricia" uniqKey="Faivre Rampant P" first="Patricia" last="Faivre Rampant">Patricia Faivre Rampant</name><name sortKey="Guerin, Vanina" sort="Guerin, Vanina" uniqKey="Guerin V" first="Vanina" last="Guerin">Vanina Guerin</name><name sortKey="Jorge, Veronique" sort="Jorge, Veronique" uniqKey="Jorge V" first="Véronique" last="Jorge">Véronique Jorge</name><name sortKey="Schmutz, Jeremy" sort="Schmutz, Jeremy" uniqKey="Schmutz J" first="Jeremy" last="Schmutz">Jeremy Schmutz</name><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name></noCountry><country name="France"><region name="Île-de-France"><name sortKey="Bresson, Alois" sort="Bresson, Alois" uniqKey="Bresson A" first="Aloïs" last="Bresson">Aloïs Bresson</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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